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Open3DQSAR x64
Open3DQSAR x64 2.24   
Open3DQSAR x64 is an open-source tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs). Open3DQSAR can generate steric potential, electron density and MM/QM electrostatic potential ...
Open Source

Open3DALIGN x64
Open3DALIGN x64 2.28   
... LAMDA algorithm by Richmond and co-workers), in a pharmacophore-based fashion using Pharao as the alignment engine, or finally in a mixed mode consisting in the combination of the latter two ...
Freeware
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