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Gwyddion
Gwyddion 2.66   
... area, volume, boundary length, bounding dimensions · intergral transforms: 2D FFT, 2D continuous wavelet transform (CWT), 2D ... · removal of data under arbitrary mask using Laplace or fractal interpolation · automatic xy plane rotation ...
Open Source

Maxima
Maxima 5.44.0   
... and numerical expressions, including differentiation, integration, Taylor series, Laplace transforms, ordinary differential equations, systems of linear equations, polynomials, ...
Open Source
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